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Fulda, University and State Library, Cod. C 22a (1) 2° (F₁)
 Digital copy: https://nbn-resolving.org/urn:nbn:de:hebis:66:fuldig-9683782
 Description on Theatrum Paracelsicum

Dresden, State and University Library, Mscr.Dresd.J.409
 Description on Theatrum Paracelsicum

Klagenfurt, University Library, PA 77
 Digital copy: http://ubdocs.uni-klu.ac.at/open/voll/handschriften/AC05975453.pdf
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Admont, Abbey Library, Hs. 813
 17th century
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Admont, Abbey Library, Hs. 855
 1626
 Description on Theatrum Paracelsicum

Salzburg, Salzburg Museum, Hs 2136
 late 16th century
 Description on Theatrum Paracelsicum

Herzogenburg, Abbey Library, Ms 363
 Description on Theatrum Paracelsicum

Vienna, National Library, Cod. 11133
 Description on Theatrum Paracelsicum

Salzburg, Salzburg Museum, Hs 2189
 ca. 1700
 Description on Theatrum Paracelsicum

Görlitz, Science Library, Th VI 146 (G)
 Görlitz · 1564
 Digital copy: http://digital.slub-dresden.de/id45288604X
 Description on Theatrum Paracelsicum

Wolfenbüttel, Herzog August Library, Cod. Guelf. 160 Extrav. (W₁)
 Görlitz · 1567
 Digital copy: http://diglib.hab.de/mss/160-extrav/start.htm
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Munich, State Library, cgm 4416(21) (M₁)
 Description on Theatrum Paracelsicum

Berlin, State Library, Ms. germ. quart. 50 (Bl)
 1569
 Description on Theatrum Paracelsicum

Rostock, University Library, Mss. theol. 76 (Rs)
 Description on Theatrum Paracelsicum

Leiden, University Library, VCF 24 (L₁)
 Digital copy: http://hdl.handle.net/1887.1/item:2028734
 Description on Theatrum Paracelsicum

Leiden, University Library, VCF 25 (L₂)
 Digital copy: http://hdl.handle.net/1887.1/item:1989631
 Description on Theatrum Paracelsicum

Heidelberg, University Library, cpg 476 (H₁)
 Digital copy: http://digi.ub.uni-heidelberg.de/diglit/cpg476
 Description on Theatrum Paracelsicum

Heidelberg, University Library, cpg 26 (H₂)
 Digital copy: http://digi.ub.uni-heidelberg.de/diglit/cpg26
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Heidelberg, University Library, cpg 51 (H₃)
 Digital copy: http://digi.ub.uni-heidelberg.de/diglit/cpg51
 Description on Theatrum Paracelsicum

Copenhagen, Royal Library, Thott 54 kvart (K₁)
 Description on Theatrum Paracelsicum

Munich, State Library, cgm 949
 1588
 Digital copy: http://mdz-nbn-resolving.de/urn:nbn:de:bvb:12-bsb00043385-3
 Description on Theatrum Paracelsicum

Wrocław, University Library, R 334 (B₁) [probably lost]
 Description on Theatrum Paracelsicum

Wrocław, University Library, R 333 (B₂)
 1626-1675
 Description on Theatrum Paracelsicum

Leiden, University Library, VCQ 38 (L₃)
 Description on Theatrum Paracelsicum

Wolfenbüttel, Herzog August Library, Cod. Guelf. 28.4 Aug. 4° (W₂)
 Description on Theatrum Paracelsicum

Wolfenbüttel, Herzog August Library, Cod. Guelf. 218 Extrav. (W₃)
 Augsburg · 1599
 Description on Theatrum Paracelsicum

Wolfenbüttel, Herzog August Library, Cod. Guelf. 32.1 Aug. 4° (W₄)
 Description on Theatrum Paracelsicum

Wolfenbüttel, Herzog August Library, Cod. Guelf. 37.2 Aug. 2° (W₅)
 Description on Theatrum Paracelsicum

Gotha, Research Library, Chart. B 31 (W₅)
 Description on Theatrum Paracelsicum

Wolfenbüttel, Herzog August Library, Cod. Guelf. 263.5 Extrav. (W₆)
 late 16th century
 Description on Theatrum Paracelsicum

Bern, Burger Library, Cod. 529 (Bn₁)
 16th century
 Description on Theatrum Paracelsicum

Bern, Burgerbibliothek, Cod. 500 (Bn₂)
 16th century
 Description on Theatrum Paracelsicum

Greifswald, University Library, Ms. 1002 (Gr)
 1595
 Description on Theatrum Paracelsicum

Copenhagen, Royal Library, Thott 119 kvart (K₂)
 Description on Theatrum Paracelsicum

Salzburg, University Library, Cod. M II 101 (S₁)
 Description on Theatrum Paracelsicum

Wolfenbüttel, Herzog August Library, Cod. Guelf. 41 Aug. 4° (W₇)
 Digital copy: http://diglib.hab.de/wdb.php?dir=mss/41-aug-4f
 Description on Theatrum Paracelsicum

Wolfenbüttel, Herzog August Library, Cod. Guelf. 50 Aug. 4° (W₈)
 Description on Theatrum Paracelsicum

Wolfenbüttel, Herzog August Library, Cod. Guelf. 45 Aug. 4° (W₉)
 Description on Theatrum Paracelsicum

Wolfenbüttel, Herzog August Library, Cod. Guelf. 53 Aug. 4° (W₁₀)
 Description on Theatrum Paracelsicum

Salzburg, Museum Library, Hs 840 (S₂)
 late 16th century
 Description on Theatrum Paracelsicum

Copenhagen, Royal Library, GKS 1396 kvart (K₃)
 Description on Theatrum Paracelsicum

Erlangen, University Library, MS B 41 (E)
 Description on Theatrum Paracelsicum

Vatican City, Vatican Library, Reg. lat. 1344 (R)
 Digital copy: https://digi.vatlib.it/view/MSS_Reg.lat.1344
 Description on Theatrum Paracelsicum

Leiden, University Library, VCF 30 (L₄)
 Description on Theatrum Paracelsicum

Munich, State Library, cgm 4416(25) (M₃)
 Description on Theatrum Paracelsicum

Wolfenbüttel, Herzog August Library, Cod. Guelf. 18.25 Aug. 4° (W₁₁)
 Description on Theatrum Paracelsicum

Copenhagen, Royal Library, Thott 35 folio (K₄)
 Description on Theatrum Paracelsicum

London, British Library, Harley MS 516 (Lo)
 Description on Theatrum Paracelsicum

Wolfenbüttel, Herzog August Library, Cod. Guelf. 51.3 Aug. 4° (W₁₂)
 Description on Theatrum Paracelsicum

Wrocław, University Library, R 2316 (B₃)
 Digital copy: http://www.bibliotekacyfrowa.pl/publication/37335
 Description on Theatrum Paracelsicum

Kassel, University Library, 2° Ms. chem. 3 (Ka)
 Description on Theatrum Paracelsicum